Project 14

Structural basis of complex I function and assembly

Principle Investigator: Dr. Janet Vonck, Prof. Dr. Volker Zickermann

Research Areas: Structural Biology and Biochemistry

Summary

Respiratory complex I is a 1 MDa membrane protein complex with a central role in energy metabolism. In humans, assembly of the intricate molecular machine (44 subunits, 9 redox active cofactors) requires more than 15 assembly factors. We use complex I from the aerobic yeast Yarrowia lipolytica as a model system. Our high-resolution cryo-EM structures of complex I in native form and during steady state activity have enabled us to define proton translocation pathways by protein-bound water molecules and to monitor detailed conformational changes during turnover. Our first goal is to gain a comprehensive understanding of the catalytic mechanism of complex I. Cryo-EM structures of assembly intermediates have helped us elucidate the role of NDUFAF1 in building the proton pumping module and of NDUFAF2 in attaching the NADH oxidation module. Our second goal is to understand complex I assembly and the function of the assembly factors in each step. Our work on the structure, function and assembly of complex I has offered clues on the pathogenesis of NDUFS4-linked Leigh syndrome. Our third goal is to take advantage of our yeast genetic model system to unravel how complex I dysfunction causes human diseases.

Dr. Janet Vonck

Max Planck Institute of Biophysics, Frankfurt

Website

Prof. Dr. Volker Zickermann

Institute of Biochemistry II, Medical School Goethe University, Frankfurt

Website

P14: PROJECT-RELATED PUBLICATIONS

  1. Pecorilla C, Altmeyer A, Haapanen O, Lee Y, Zickermann V*, Sharma V* (2025) Conformational dynamics of a histidine molecular switch in a cation/proton antiporter. Biochim Biophys Acta Bioenerg 1866: 149563
  2. Lasham J*, Djurabekova A, Kolypetris G, Zickermann V, Vonck J, Sharma V* (2025) Assessment of amino acid charge states based on cryo-electron microscopy and molecular dynamics simulations of respiratory complex I. Biochim Biophys Acta Bioenerg 1866: 149512
  3. Laube E, Schiller J, Zickermann V*, Vonck J* (2024) Using cryo-EM to understand the assembly pathway of respiratory complex I. Acta Crystallogr D 80, 159-173
  4. Djurabekova A, Lasham J, Zdorevski O, Zickermann V, Sharma V* (2024) Long-range electron proton coupling in respiratory complex I – insights from molecular simulations of the quinone chamber and antiporter-like subunits. Biochem J 481, 499-514
  5. Lasham J*, Haapanen O, Zickermann V, Sharma V* (2023) Tunnel dynamics of quinone derivatives and its coupling to protein conformational rearrangements in respiratory complex I. Biochim Biophys Acta Bioenerg 1864: 148951
  6. Schiller J, Laube E, Wittig I, Kühlbrandt W, Vonck J, Zickermann V (2022) Insights into complex I assembly: Function of NDUFAF1 and a link with cardiolipin remodeling. Sci Adv 8: eadd3855
  7. Parey K, Lasham J, Mills DJ, Djurabekova A, Haapanen O, Galemou Yoga E, Xie H, Kühlbrandt W, Sharma V, Vonck J, Zickermann V (2021) High-resolution structure and dynamics of mitochondrial complex I – insights into the proton pumping mechanism. Sci Adv 7: abj3221
  8. Galemou Yoga E, Parey K, Djurabekova A, Haapanen O, Siegmund K, Zwicker K, Sharma V, Zickermann V, Angerer H (2020) Essential role of accessory subunit LYRM6 in the mechanism of mitochondrial complex I. Nat Commun 11: 6008
  9. Parey K, Wirth C, Vonck J, Zickermann V (2020) Respiratory complex I — structure, mechanism and evolution. Curr Opin Struct Biol 63: 1-9
  10. Parey K, Haapanen O, Sharma V, Köfeler H, Züllig T, Prinz S, Siegmund K, Wittig I, Mills DJ, Vonck J, Kühlbrandt W, Zickermann V (2019) High-resolution cryo-EM structures of respiratory complex I: Mechanism, assembly, and disease. Sci Adv 5: eaax9484